The analysis of ecosystems interaction and correlations between anthropogenic disturbances and quality parameters of natural systems. On the example of peat-bog mezzo-ecosystems of Western Siberia region proposed a method to restore their productivity by rotation of various terrestrial ecosystems. The technology of reclamation of disturbed territories with the use of amino complex compounds derived from industrial waste has been developed for the integrated use of resources of peatland ecosystems in the functioning of resource extraction industries. The recommendations on the use of aminocomplexes for decontamination and lithification of domestic and industrial wastes, sludge, bottom sediments containing toxic compounds are given. The methodology of complex use of resources for resource processing industries is developed, including a statistical analysis of material and energy flows, a systematic method of forecasting and control of chemical and technological processes accompanying the functioning of industrial production, as well as their environmental and economic optimization. Applied solutions for integrated processing of resources of peat-bog ecosystems and the rational use of the main commercial products: activated carbon, feed additives, carbon dioxide and water vapor are presented.